2024 Gethyperpathway

Gethyperpathway

Author: tzae

August undefined, 2024

Webtmp <- getHyperPathway (data = n, object = cellcallObj, cella_cellb = i, Org = species) return (tmp) }) names (pathway.list) <- colnames (cellcallObj@data$expr_l_r_log2_scale) saveRDS (cellcallObj, file.path (out_dir, 'cellcallObj.rds')) saveRDS (pathway.list, file.path (out_dir, 'pathway.list.rds')) } withProgress ( { WebgetHyperPathway: enrich communication relation on the pathway LR2TF: get score of Triple relation corresponding specific... LRT.Dimplot: get score of Triple relation corresponding specific... mylog2foldChange.diy: calculate foldchange for each celltype plotBubble: plot bubble graph ridgeplot.DIY: plot ridge graph

What is a hyperpath, anyway?

WebR/getSignificantPathway.R defines the following functions: getHyperPathway. CellInter-class: The CellInter Class The CellInter object is the center of... ConnectProfile: create a Cellwave objects counts2normalized_10X: transform count to CPM counts2normalized_smartseq2: transform count to RPKM or TPM within Hsapiens and … WebR/sankey3D.R defines the following functions: LRT.Dimplot. CellInter-class: The CellInter Class The CellInter object is the center of... ConnectProfile: create a Cellwave objects counts2normalized_10X: transform count to CPM counts2normalized_smartseq2: transform count to RPKM or TPM within Hsapiens and Mmusculus CreateNichConObject: create a … lea speyer add rlp

ShellyCoder/cellcall source: R/GSEA.R - rdrr.io

WebDocumented in getGSEA mylog2foldChange.diy. #' calculate foldchange for each celltype #' @param inData a dataframe of gene expression #' @param cell.type the cell type which you want to calculate the foldchange #' @param method default is "median",eg "median" or "mean" #' @param probs the quantile for median calculate #' @return the foldchange ... WebNov 21, 2024 · getHyperPathway: enrich communication relation on the pathway; LR2TF: get score of Triple relation corresponding specific... LRT.Dimplot: get score of Triple relation corresponding specific... mylog2foldChange.diy: calculate foldchange for each celltype; plotBubble: plot bubble graph; ridgeplot.DIY: plot ridge graph WebJan 29, 2024 · getHyperPathway: enrich communication relation on the pathway; LR2TF: get score of Triple relation corresponding specific... LRT.Dimplot: get score of Triple relation corresponding specific... mylog2foldChange.diy: calculate foldchange for each celltype; plotBubble: plot bubble graph; ridgeplot.DIY: plot ridge graph how to downgrade among us version

getHyperPathway : enrich communication relation on the pathway

Super-hyperroute Wookieepedia Fandom

Webget under way 1. To proceed or begin to progress; to start. OK, everyone, let's get under way—you have an hour to complete the exam. I'm sure you can ask your question once … WebAug 17, 2024 · CellCall provides a variety of functions including intercellular communication analysis, pathway activity analysis and a rich suite of visualization tools to intuitively … how to downgrade a mac to mojaveWebJan 2, 2024 · getHyperPathway (data, object, cella_cellb, IS_core = TRUE, Org = "Homo sapiens") Arguments. data: a dataframe of communication score with row LR and column cellA-cellB. cella_cellb: explore the LR between sender cellA and receiver cellB, eg: "A … lea sperlich

"WebJan 2, 2024 · getHyperPathway: enrich communication relation on the pathway LR2TF: get score of Triple relation corresponding specific... LRT.Dimplot: get score of Triple relation corresponding specific... mylog2foldChange.diy: calculate foldchange for each celltype mylog2foldChange.diy.casecontrol: calculate foldchange between case and control for … " - Gethyperpathway

Gethyperpathway

WebNov 21, 2024 · getHyperPathway(data, cella_cellb, IS_core = TRUE, Org = "Homo sapiens") Arguments. data: a dataframe of communication score with row LR and column cellA-cellB. cella_cellb: explore the LR between sender cellA and receiver cellB, eg: "A … WebManage Prior Authorization requests for your patients using this website. There is no need to call or send faxes to obtain a Prior Authorization

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WebgetHyperPathway (): For pathway activity analysis, Bubble plot is adopted to present the analysis results. Function of getForBubble is used to merge the data and plotBubble is used to draw the bubble plot. myPub.df <- getForBubble ( pathway.hyper.list, cella_cellb= colnames ( n )) p <- plotBubble ( myPub.df) getForBubble (): 2.3 Visualization Webtmp <- getHyperPathway(data = n, object = mt, cella_cellb = i, Org="Homo sapiens") return(tmp)}) Error in parse(text = elt) : :1:7: unexpected symbol 1: Using an ^ Does …

WebJan 29, 2024 · getHyperPathway: enrich communication relation on the pathway; LR2TF: get score of Triple relation corresponding specific... LRT.Dimplot: get score of Triple relation corresponding specific... mylog2foldChange.diy: calculate foldchange for each celltype; plotBubble: plot bubble graph; ridgeplot.DIY: plot ridge graph WebApr 21, 2016 · Khani, A., M. Hickman, and H. Noh, 2015. A hyperpath, as defined by Nguyen and Pallottino 1988, is an acyclic subnetwork with at least one link connecting …

WebOct 25, 2024 · CreateNichConObject(), TransCommuProfile(), getHyperPathway(), LR2TF(), CreateObject_fromSeurat() So manual set the parameter Org = "Mus musculus", we will reduce such duplicate settings in future versions and replace them with a global setting. Sorry for this inconvience. Thanks !

WebgetHyperPathway: enrich communication relation on the pathway; LR2TF: get score of Triple relation corresponding specific... LRT.Dimplot: get score of Triple relation …

WebSuper-hyperroutes were types of hyperspace routes that served as the primary routes of the galaxy. Such hyperspace routes were the Corellian Run, Corellian Trade Spine, Hydian … how to downgrade an app androidWebContribute to pma22wustl/Transcriptional-and-Immune-landscape-of-cardiac-sarcoidosis development by creating an account on GitHub. leas pavilion folkestoneWebThe ShellyCoder/cellcall package contains the following man pages: CellInter-class ConnectProfile counts2normalized_10X counts2normalized_smartseq2 CreateNichConObject getCorrelatedGene getDistanceKEGG getForBubble getGSEA getGSEAplot getHyperPathway LR2TF LRT.Dimplot mylog2foldChange.diy plotBubble … how to downgrade android 12 to 11 on samsungWebAPI and function index for ShellyCoder/cellcall. CellInter-class: The CellInter Class The CellInter object is the center of... ConnectProfile: create a Cellwave objects counts2normalized_10X: transform count to CPM counts2normalized_smartseq2: transform count to RPKM or TPM within Hsapiens and Mmusculus CreateNichConObject: create a … how to downgrade android appWebgetHyperPathway: enrich communication relation on the pathway; LR2TF: get score of Triple relation corresponding specific... LRT.Dimplot: get score of Triple relation corresponding … leasplan abocarWebR/codeAllCaseControl_v1.5.R defines the following functions: ViewInterCircos TransCommuProfile CreateNichConObject trans2tripleScore plotBubble getGSEAplot LR2TF getGSEA mylog2foldChange.diy.casecontrol mylog2foldChange.diy getHyperPathway viewPheatmap getDistanceKEGG getCorrelatedGene ConnectProfile … how to downgrade android updateWebJan 29, 2024 · getHyperPathway: enrich communication relation on the pathway; LR2TF: get score of Triple relation corresponding specific... LRT.Dimplot: get score of Triple relation corresponding specific... mylog2foldChange.diy: calculate foldchange for each celltype; plotBubble: plot bubble graph; ridgeplot.DIY: plot ridge graph leas pony shop